• Date: 27th November 2013

  • Venue: Granada, Spain

 

Within the Mr.SymBioMath development coordination meeting a focus will be put on the main applications in the areas of comparative genomics and biomedicine as well as common aspects such as for example visualisation.

 

Agenda:

Wednesday, 27th November: Project track

Time Presenter Content
9:00 - 9:15 Oswaldo Trelles Introduction
9:15 - 10:45 Michael Krieger and Paul Heinzlreiter

- Project structure proposal

- Development process and infrastructure proposal

10:45 - 11:00 Coffee break  
11:00 - 13:00   Project workpackages and tasks
13:00 - 14:15 Lunch  
14:30 - 15:00 Balázs Tukora Visualising genomics data (LRZ perspective)
15:00 - 16:00   Wrap up / Closing

 

Wednesday, 27th November: Project track / tasks session

Time Chair Content
11:00 - 11:30 Johan Karlsson Block 1: Infrastructure scenarios
  • MS1: Accounting: Create user and groups accounts
  • MS2: Login / logout the system (management of user rights)
  • MS3: Install a new application (including service's registering)
  • MS4: Up- and down-load files
  • MS5: Browsing the service catalogue, search and discovering
  • MS6: Browsing the user space (file system)
  • MS7: Service Execution. Interactive service invocation
  • MS8: Monitoring service invocation
  • MS9: Results (visualization, download, further processing)
11:00 - 12:30 Oswaldo Trelles Block 2: Comparative genomics scenarios
  • CG1: multi-genome comparison on higher mammalians
  • CG2: Multi-genome comparison and phylogenomics
  • CG3: Symbiont study case
11:00 - 12:30 James Perkins Block 3: Biomedical scenarios
  • BM1: Access to summarized information of the Allergic DB through mobile devices
  • BM2: Data analysis scenario: Combining protein interaction and pathway data in order to view genes associated with nonsteroidal anti-inflammatory drug hypersensitivity in the context of biological networks
  • BM3: Discovering correlations between clinical and molecular patient data